X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1SITTING DROP829320% PEG6000, 1 M lithium chloride, pH 8.0, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.3563.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 138.007α = 90
b = 138.007β = 90
c = 113.675γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2011-12-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 11.1271SOLEILPROXIMA 1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1397.586990.1270.12711.25.92256022186
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.163.3399.70.6640.6641.25.92765

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1FJM3.197.5862015792898.250.2260.2240.276RANDOM60.665
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.97-0.971.93
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.286
r_dihedral_angle_3_deg17.231
r_dihedral_angle_4_deg16.84
r_dihedral_angle_1_deg5.407
r_scangle_it2.731
r_scbond_it1.619
r_mcangle_it1.37
r_angle_refined_deg1.022
r_mcbond_it0.763
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.286
r_dihedral_angle_3_deg17.231
r_dihedral_angle_4_deg16.84
r_dihedral_angle_1_deg5.407
r_scangle_it2.731
r_scbond_it1.619
r_mcangle_it1.37
r_angle_refined_deg1.022
r_mcbond_it0.763
r_nbtor_refined0.307
r_symmetry_hbond_refined0.247
r_nbd_refined0.19
r_symmetry_vdw_refined0.18
r_xyhbond_nbd_refined0.133
r_chiral_restr0.039
r_bond_refined_d0.007
r_gen_planes_refined0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4908
Nucleic Acid Atoms
Solvent Atoms34
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
MxCuBEdata collection
XDSdata reduction
MOLREPphasing