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Crystal structure of beta-site app-cleaving enzyme 1 (BACE-DB-MUT) complex with N-(N-(4- acetamido-3-chloro-5-methylbenzyl)carbamimidoyl)-3-(4- methoxyphenyl)-5-methyl-4-isothiazolecarboxamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 35% PEG8K, 0.2 M ammonium sulfate, pH 6.2, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.77 55.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.54 α = 90 b = 131.177 β = 97.61 c = 90.315 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 92 MICROMAX CONFOCAL 2005-04-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 96.8 0.087 7.7 3.6 66645
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 91.1 0.472 3.2 6244
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 50 66542 3377 96.54 0.2265 0.2239 0.223 0.277 0.2737 RANDOM 26.3625
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.52 0.52 -1.86 4.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.086 r_dihedral_angle_3_deg 14.724 r_dihedral_angle_4_deg 14.327 r_dihedral_angle_1_deg 5.612 r_angle_refined_deg 1.154 r_scangle_it 1.073 r_scbond_it 0.623 r_mcangle_it 0.589 r_mcbond_it 0.318 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.086 r_dihedral_angle_3_deg 14.724 r_dihedral_angle_4_deg 14.327 r_dihedral_angle_1_deg 5.612 r_angle_refined_deg 1.154 r_scangle_it 1.073 r_scbond_it 0.623 r_mcangle_it 0.589 r_mcbond_it 0.318 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.222 r_nbd_refined 0.179 r_xyhbond_nbd_refined 0.125 r_symmetry_hbond_refined 0.099 r_chiral_restr 0.069 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12156 Nucleic Acid Atoms Solvent Atoms 819 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling CNS phasing