4FBL

LipS and LipT, two metagenome-derived lipolytic enzymes increase the diversity of known lipase and esterase families


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION4.52920.1 M NaAcetate, 3 M NaCl,0.01 M spermidine, pH 4.5, VAPOR DIFFUSION, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.6453.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 105.27α = 90
b = 105.27β = 90
c = 120.98γ = 90
Symmetry
Space GroupP 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDMonochromator (horizontally side diffracting Silicon 111 crystal)2011-11-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.87ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9940.31000.119.85.190469859102229
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.992.11000.82513179

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1TQH1.9940.3229046985910453499.950.178050.176020.21679RANDOM28.736
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.90.9-1.8
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.334
r_dihedral_angle_4_deg20.096
r_dihedral_angle_3_deg16.412
r_dihedral_angle_1_deg6.533
r_scangle_it5.658
r_scbond_it3.641
r_angle_refined_deg2.193
r_mcangle_it2.16
r_mcbond_it1.306
r_chiral_restr0.163
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.334
r_dihedral_angle_4_deg20.096
r_dihedral_angle_3_deg16.412
r_dihedral_angle_1_deg6.533
r_scangle_it5.658
r_scbond_it3.641
r_angle_refined_deg2.193
r_mcangle_it2.16
r_mcbond_it1.306
r_chiral_restr0.163
r_bond_refined_d0.029
r_gen_planes_refined0.013
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7418
Nucleic Acid Atoms
Solvent Atoms608
Heterogen Atoms34

Software

Software
Software NamePurpose
DNAdata collection
MOLREPphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling