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Crystal structure of the MG2+ loaded VWA domain of plasmodium falciparum trap protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 25% PEG 3350, 0.1M BIS-TRIS, 0.2M MAGNESIUM SULFATE, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.28 46.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.313 α = 90 b = 89.313 β = 90 c = 104.192 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD THE OPTICAL ELEMENTS CONSIST OF A VERTICALLY COLLIMATING MIRROR (M1, FOCUS AT INFINITY) FOLLOWED BY A BARTELS MONOCHROMATOR WITH DUAL CHANNEL CUT CRYSTALS (DCCM) IN (+--+) GEOMETRY, AND A TOROIDAL MIRROR (M2) TO VERTICALLY AND HORIZONTALLY
FOCUS THE BEAM AT THE SAMPLE POSITION (WITH 2:1 HORIZONTAL DEMAGNIFICATION) 2010-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 50 99.8 0.13 14.72 10.271 84445 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.83 98.6 0.853 2.9 10
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.73 30 44675 42440 2235 100 0.17905 0.17905 0.177 0.1836 0.21819 0.2211 RANDOM 11.147
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.07 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.355 r_dihedral_angle_3_deg 11.893 r_dihedral_angle_4_deg 8.109 r_dihedral_angle_1_deg 6.106 r_scangle_it 3.208 r_scbond_it 2.196 r_angle_refined_deg 1.399 r_mcangle_it 1.246 r_angle_other_deg 0.932 r_mcbond_it 0.921
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.355 r_dihedral_angle_3_deg 11.893 r_dihedral_angle_4_deg 8.109 r_dihedral_angle_1_deg 6.106 r_scangle_it 3.208 r_scbond_it 2.196 r_angle_refined_deg 1.399 r_mcangle_it 1.246 r_angle_other_deg 0.932 r_mcbond_it 0.921 r_symmetry_vdw_refined 0.269 r_symmetry_vdw_other 0.261 r_mcbond_other 0.221 r_nbd_refined 0.207 r_symmetry_hbond_refined 0.206 r_nbd_other 0.193 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_other 0.113 r_chiral_restr 0.09 r_nbtor_other 0.085 r_metal_ion_refined 0.039 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3088 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms 89
Software Software Software Name Purpose MAR345dtb data collection SHARP phasing REFMAC refinement XDS data reduction XDS data scaling