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JAK1 kinase (JH1 domain) in complex with compound 49
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2B7A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 300 PEG 6000, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.37 48.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.64 α = 90 b = 173.239 β = 94.22 c = 44.799 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.6 0.068 17 3.7 50322 50322 -2 27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.98 96.1 0.489 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2B7A 1.9 50 -2 50322 47965 2336 99 0.183 0.18325 0.1812 0.1871 0.22567 0.2294 RANDOM 32.841
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.69 0.15 -0.02 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.598 r_dihedral_angle_4_deg 17.198 r_dihedral_angle_3_deg 12.104 r_dihedral_angle_1_deg 5.579 r_scangle_it 4.595 r_mcangle_it 3.997 r_mcbond_it 3.096 r_scbond_it 3.074 r_angle_refined_deg 1.171 r_angle_other_deg 0.833
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.598 r_dihedral_angle_4_deg 17.198 r_dihedral_angle_3_deg 12.104 r_dihedral_angle_1_deg 5.579 r_scangle_it 4.595 r_mcangle_it 3.997 r_mcbond_it 3.096 r_scbond_it 3.074 r_angle_refined_deg 1.171 r_angle_other_deg 0.833 r_mcbond_other 0.63 r_symmetry_vdw_other 0.304 r_nbd_refined 0.199 r_nbd_other 0.187 r_nbtor_refined 0.176 r_symmetry_vdw_refined 0.157 r_symmetry_hbond_refined 0.147 r_xyhbond_nbd_refined 0.132 r_nbtor_other 0.082 r_chiral_restr 0.064 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4677 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms 50
Software Software Software Name Purpose BOS data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling