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Crystal Structure of an Ancestor of All Faviina Proteins
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.7 277 0.06M Tris, 0.1M magnesium sulfate, 20% PEG 4000, pH 7.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.08 40.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.488 α = 90 b = 93.058 β = 92.72 c = 88.998 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2008-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 28.35 98.4 0.043 12.9 2.45 274833 112134 3 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 28.12 114028 106316 5612 98.16 0.17484 0.17294 0.1775 0.20981 0.2144 RANDOM 11.434
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.373 r_dihedral_angle_4_deg 11.778 r_dihedral_angle_3_deg 11.243 r_dihedral_angle_1_deg 6.908 r_sphericity_free 3.394 r_scangle_it 3.048 r_scbond_it 2.054 r_angle_refined_deg 1.402 r_mcangle_it 1.307 r_sphericity_bonded 1.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.373 r_dihedral_angle_4_deg 11.778 r_dihedral_angle_3_deg 11.243 r_dihedral_angle_1_deg 6.908 r_sphericity_free 3.394 r_scangle_it 3.048 r_scbond_it 2.054 r_angle_refined_deg 1.402 r_mcangle_it 1.307 r_sphericity_bonded 1.238 r_rigid_bond_restr 1.065 r_angle_other_deg 0.851 r_mcbond_it 0.812 r_mcbond_other 0.31 r_chiral_restr 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7116 Nucleic Acid Atoms Solvent Atoms 907 Heterogen Atoms 1
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement d*TREK data reduction SCALA data scaling