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Crystal structure of avian FAK FERM domain FAK31-405 at 3.2A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AEH PDB ENTRY 2AEH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 18%PEG4000, 325MM MGCL2, 0.1M TRIS PH8.5, 10MM TCEP
Crystal Properties Matthews coefficient Solvent content 2.56 51.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.934 α = 90 b = 146.128 β = 96.98 c = 69.052 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 73 99.9 0.08 7.9 5.6 13590 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.37 99.9 0.33 2 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2AEH 3.2 73.06 13590 699 99.91 0.17633 0.17304 0.1792 0.23977 0.2416 RANDOM 58.567
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 0.26 -0.4 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.082 r_dihedral_angle_3_deg 15.46 r_dihedral_angle_4_deg 12.988 r_dihedral_angle_1_deg 5.494 r_mcangle_it 2.952 r_mcbond_it 1.684 r_mcbond_other 1.682 r_scbond_it 1.556 r_angle_refined_deg 1.133 r_angle_other_deg 0.702
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.082 r_dihedral_angle_3_deg 15.46 r_dihedral_angle_4_deg 12.988 r_dihedral_angle_1_deg 5.494 r_mcangle_it 2.952 r_mcbond_it 1.684 r_mcbond_other 1.682 r_scbond_it 1.556 r_angle_refined_deg 1.133 r_angle_other_deg 0.702 r_chiral_restr 0.061 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5385 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing