4CY2

Crystal structure of the KANSL1-WDR5-KANSL2 complex.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.920% (W/V) PEG 3350, 0.2 M POTASSIUM NITRATE, PH 6.9.
Crystal Properties
Matthews coefficientSolvent content
2.140.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.59α = 90
b = 86.6β = 90
c = 45.08γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2013-05-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-2ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
121001000.1510.77.3222612.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.199.90.842.67.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2G99243.321128113399.940.200570.199390.22183RANDOM24.616
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-5.930.855.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.544
r_dihedral_angle_3_deg12.853
r_dihedral_angle_4_deg12.815
r_dihedral_angle_1_deg6.668
r_angle_refined_deg1.041
r_angle_other_deg0.696
r_mcangle_it0.558
r_mcbond_it0.323
r_mcbond_other0.323
r_scbond_it0.287
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.544
r_dihedral_angle_3_deg12.853
r_dihedral_angle_4_deg12.815
r_dihedral_angle_1_deg6.668
r_angle_refined_deg1.041
r_angle_other_deg0.696
r_mcangle_it0.558
r_mcbond_it0.323
r_mcbond_other0.323
r_scbond_it0.287
r_chiral_restr0.063
r_bond_refined_d0.005
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2506
Nucleic Acid Atoms
Solvent Atoms104
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing