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Evidence that GH115 alpha-glucuronidase activity is dependent on conformational flexibility
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other APO FORM SEE PAPER
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 19% PEG3350, 0.2M SODIUM CITRATE PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.37 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.04 α = 90 b = 130.29 β = 90 c = 190.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2011-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 45.43 94.4 0.1 9.3 2.9 93249 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.14 2.26 91.5 0.42 2.5 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT APO FORM SEE PAPER 2.14 44.74 88546 4649 93.75 0.17618 0.17398 0.1795 0.21878 0.2217 RANDOM 25.906
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.06 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.427 r_dihedral_angle_4_deg 16.374 r_dihedral_angle_3_deg 13.023 r_dihedral_angle_1_deg 6.556 r_mcangle_it 2.932 r_scbond_it 2.289 r_mcbond_it 1.97 r_mcbond_other 1.969 r_angle_refined_deg 1.622 r_angle_other_deg 1.052
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.427 r_dihedral_angle_4_deg 16.374 r_dihedral_angle_3_deg 13.023 r_dihedral_angle_1_deg 6.556 r_mcangle_it 2.932 r_scbond_it 2.289 r_mcbond_it 1.97 r_mcbond_other 1.969 r_angle_refined_deg 1.622 r_angle_other_deg 1.052 r_chiral_restr 0.103 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12687 Nucleic Acid Atoms Solvent Atoms 602 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling MOLREP phasing