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Inhibitors of Jak2 Kinase domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XA4 PDB ENTRY 2XA4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 2.82 56.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.507 α = 90 b = 126.889 β = 97.53 c = 135.875 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2008-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 21.2 99.4 0.1 11.6 4 19353 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.9 98.7 0.5 2.1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2XA4 2.75 21 18362 991 99.36 0.19906 0.19649 0.2002 0.24568 0.2432 RANDOM 50.193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.57 0.5 0.31 -2.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.71 r_dihedral_angle_4_deg 24.918 r_dihedral_angle_3_deg 19.064 r_dihedral_angle_1_deg 5.883 r_mcangle_it 3.88 r_scbond_it 2.302 r_mcbond_it 2.262 r_mcbond_other 2.26 r_angle_refined_deg 1.699 r_angle_other_deg 1.525
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.71 r_dihedral_angle_4_deg 24.918 r_dihedral_angle_3_deg 19.064 r_dihedral_angle_1_deg 5.883 r_mcangle_it 3.88 r_scbond_it 2.302 r_mcbond_it 2.262 r_mcbond_other 2.26 r_angle_refined_deg 1.699 r_angle_other_deg 1.525 r_chiral_restr 0.07 r_gen_planes_refined 0.011 r_bond_refined_d 0.01 r_bond_other_d 0.005 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4420 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling AMoRE phasing