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NMR structure of human TDP-43 tandem RRMs in complex with UG-rich RNA
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
3D C13-EDITED NOESY
94%WATER/6%D2O
50 mM
6.8
298.0
2
3D N15- EDITED NOESY
94%WATER/6%D2O
50 mM
6.8
298.0
3
2D NOESY
94%WATER/6%D2O
50 mM
6.8
298.0
4
2D TOCSY
94%WATER/6%D2O
50 mM
6.8
298.0
5
3D HCCH-TOCSY
94%WATER/6%D2O
50 mM
6.8
298.0
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
900
NMR Refinement
Method
Details
Software
SIMULATED ANNEALING COMBINED WITH MOLECULAR DYNAMICS IN TORSION ANGLE SPACE
Amber
NMR Ensemble Information
Conformer Selection Criteria
LOWEST ENERGY AND RESTRAINT VIOLATION
Conformers Calculated Total Number
50
Conformers Submitted Total Number
20
Representative Model
1 (n/a)
Additional NMR Experimental Information
Details
MEASUREMENTS WERE PERFORMED ON THREE DIFFERENT SAMPLES,15N -LABELLED TDP-43 WITH UNLABELLED RNA, 13C,15N- LABELLED TDP-43 WITH UNLABELLED RNA, 15N-LABELLED TDP-43 WITH 13C,15N-LABELLED RNA