4ARG | pdb_00004arg

Structure of the immature retroviral capsid at 8A resolution by cryo- electron microscopy

ELECTRON MICROSCOPY

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1L6N
experimental model	PDB	2KGF

Sample
M-PMV CANC GAG TUBES

Specimen Preparation
Sample Aggregation State	HELICAL ARRAY
Vitrification Instrument
Cryogen Name	ETHANE
Sample Vitrification Details	LIQUID ETHANE

3D Reconstruction
Reconstruction Method	HELICAL
Number of Particles
Reported Resolution (Å)	7
Resolution Method
Other Details	REAL SPACE HELICAL RECONSTRUCTION WITH 3D ASYMMETRIC UNIT AVERAGING. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2089. (DEPOSITION ID: 10767).
Refinement Type
Symmetry Type	HELICAL

Map-Model Fitting and Refinement
Id	1 (1L6N, 2KGF)
Refinement Space	REAL
Refinement Protocol	RIGID BODY FIT
Refinement Target
Overall B Value
Fitting Procedure
Details	METHOD--RIGID BODY REFINEMENT PROTOCOL--NMR,XRAY

Data Acquisition
Detector Type	KODAK SO-163 FILM
Electron Dose (electrons/Å**2)	0.2

Imaging Experiment	1
Date of Experiment	2011-07-05
Temperature (Kelvin)
Microscope Model	FEI TITAN KRIOS
Minimum Defocus (nm)	1000
Maximum Defocus (nm)	4000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS	2.7
Imaging Mode	BRIGHT FIELD
Specimen Holder Model
Nominal Magnification	47000
Calibrated Magnification
Source	FIELD EMISSION GUN
Acceleration Voltage (kV)	300
Imaging Details

EM Software
Task	Software Package	Version
MODEL FITTING	UCSF Chimera
RECONSTRUCTION	AV3
RECONSTRUCTION	SPIDER

Image Processing
CTF Correction Type	CTF Correction Details	Number of Particles Selected	Particle Selection Details
	DIVISION BY 3D CTF SQ