4ARG | pdb_00004arg

Structure of the immature retroviral capsid at 8A resolution by cryo- electron microscopy


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilyRetrovirus capsid protein C-terminal domain 8077063 4000865 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyRetrovirus capsid dimerization domain-like 8077064 3001819 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyRetrovirus capsid dimerization domain-like 8077064 3001819 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRetrovirus capsid protein, N-terminal core domain 8101453 3000745 SCOP2B (2022-06-29)
CSCOP2 FamilyRetrovirus capsid protein, N-terminal core domain 8101452 4001095 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyRetrovirus capsid protein, N-terminal core domain 8101453 3000745 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRhodanesee4argB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RhodaneseECOD (v294.1)
DRrf2e4argD1 A: a/b three-layered sandwichesX: beta-GraspH: HTHT: winged helix domainF: Rrf2ECOD (v294.1)
ARhodanesee4argA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RhodaneseECOD (v294.1)
CCathelicidinse4argC1 A: a/b three-layered sandwichesX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: CathelicidinsECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D
M-PMV DPRO CANC PROTEIN- - -
A, C
M-PMV DPRO CANC PROTEIN- -