4ARG | pdb_00004arg

Structure of the immature retroviral capsid at 8A resolution by cryo- electron microscopy

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyRetrovirus capsid dimerization domain-like 8077064 3001819 SCOP2B (2022-06-29)
BSCOP2 FamilyRetrovirus capsid protein C-terminal domain 8077063 4000865 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyRetrovirus capsid dimerization domain-like 8077064 3001819 SCOP2 (2022-06-29)
CSCOP2 FamilyRetrovirus capsid protein, N-terminal core domain 8101452 4001095 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyRetrovirus capsid protein, N-terminal core domain 8101453 3000745 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyRetrovirus capsid protein, N-terminal core domain 8101453 3000745 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DGag_p24_Ce4argD1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein-C (From Topology)T: Retrovirus capsid protein-CF: Gag_p24_CECOD (1.6)
BGag_p24_Ce4argB1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein-C (From Topology)T: Retrovirus capsid protein-CF: Gag_p24_CECOD (1.6)
CGag_p24_Ne4argC1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
AGag_p24_Ne4argA1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D
M-PMV DPRO CANC PROTEIN- - -
A, C
M-PMV DPRO CANC PROTEIN- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, D
IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
B, D
IPR050195Primate lentivirus group Gag polyprotein-likeDomain
B, D
IPR008916Retrovirus capsid, C-terminalHomologous Superfamily
A, C
IPR008919Retrovirus capsid, N-terminalHomologous Superfamily