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Structure of F241L mutant of langerin carbohydrate recognition domain.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C22 PDB ENTRY 3C22
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 HANGING DROP METHOD 100 MM MES PH 6.0, 200 MM MGCL2 AND 17% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.02 39.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.959 α = 90 b = 79.959 β = 90 c = 90.419 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2008-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 19.52 99.2 0.05 24.88 7.4 111133
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 98 0.33 4.7 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3C22 1.4 19.52 105603 5529 99.2 0.17754 0.17536 0.1769 0.21859 0.1693 RANDOM 18.149
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.2 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.055 r_dihedral_angle_4_deg 19.797 r_dihedral_angle_3_deg 13.973 r_dihedral_angle_1_deg 7.556 r_scangle_it 5.072 r_scbond_it 3.518 r_angle_refined_deg 3.02 r_mcangle_it 2.744 r_mcbond_it 1.858 r_chiral_restr 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.055 r_dihedral_angle_4_deg 19.797 r_dihedral_angle_3_deg 13.973 r_dihedral_angle_1_deg 7.556 r_scangle_it 5.072 r_scbond_it 3.518 r_angle_refined_deg 3.02 r_mcangle_it 2.744 r_mcbond_it 1.858 r_chiral_restr 0.195 r_bond_refined_d 0.04 r_gen_planes_refined 0.018 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4224 Nucleic Acid Atoms Solvent Atoms 807 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing