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Kinetochore-BUBR1 kinase complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WVI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 292 15% PEG 6000, 0.1M Magnesium Acetate, 0.1M Sodium Cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.02 39.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.398 α = 90 b = 40.143 β = 91.38 c = 75.391 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 HELIOS MX Cu X-RAY OPTICS FOR X8 PROTEUM/MICROSTAR 2010-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR-H 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 38.2 99.9 0.119 0.119 14.1 8.8 19283 19266 2 2 26.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 100 0.465 0.465 2.9 6.3 2379
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2WVI 2.2 38.2 18292 18278 985 99.92 0.19626 0.19626 0.19343 0.24665 0.2188 RANDOM 24.773
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.501 r_dihedral_angle_4_deg 17.699 r_dihedral_angle_3_deg 15.141 r_dihedral_angle_1_deg 5.113 r_scangle_it 2.733 r_scbond_it 1.655 r_mcangle_it 1.133 r_angle_refined_deg 1.116 r_mcbond_it 0.603 r_chiral_restr 0.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.501 r_dihedral_angle_4_deg 17.699 r_dihedral_angle_3_deg 15.141 r_dihedral_angle_1_deg 5.113 r_scangle_it 2.733 r_scbond_it 1.655 r_mcangle_it 1.133 r_angle_refined_deg 1.116 r_mcbond_it 0.603 r_chiral_restr 0.074 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2756 Nucleic Acid Atoms Solvent Atoms 250 Heterogen Atoms
Software Software Software Name Purpose PROTEUM2 data collection AMoRE phasing REFMAC refinement SAINT data reduction SADABS data scaling