3PVL

Structure of myosin VIIa MyTH4-FERM-SH3 in complex with the CEN1 of Sans


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52890.02M MgCl2, 0.1M HEPES, pH 7.5, 22% (w/v) polyacrylic acid sodium salt 5100, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
4.0469.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 98.864α = 90
b = 98.864β = 90
c = 242.278γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2009-11-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U1.5418SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85099.570.06319.1346333276122
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.8012.87499.690.06319.334633

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.8503.73.73463332761174099.570.229220.229220.227640.25903RANDOM67.928
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.170.080.17-0.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.239
r_dihedral_angle_3_deg16.836
r_dihedral_angle_4_deg14.926
r_scangle_it5.585
r_dihedral_angle_1_deg4.92
r_scbond_it3.38
r_mcangle_it2.645
r_mcbond_it1.402
r_angle_refined_deg0.98
r_chiral_restr0.069
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.239
r_dihedral_angle_3_deg16.836
r_dihedral_angle_4_deg14.926
r_scangle_it5.585
r_dihedral_angle_1_deg4.92
r_scbond_it3.38
r_mcangle_it2.645
r_mcbond_it1.402
r_angle_refined_deg0.98
r_chiral_restr0.069
r_bond_refined_d0.007
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4888
Nucleic Acid Atoms
Solvent Atoms38
Heterogen Atoms64

Software

Software
Software NamePurpose
HKL-2000data collection
SHARPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling