3PVL | pdb_00003pvl

Structure of myosin VIIa MyTH4-FERM-SH3 in complex with the CEN1 of Sans

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	MyTH4 domain-like	8048249	4006026	SCOP2 (2022-06-29)
A	SCOP2 Family	FERM domain-like	8091833	4000747	SCOP2 (2022-06-29)
A	SCOP2 Family	SH3-domain	8091839	4000369	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MyTH4 domain-like	8091832	3002546	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PH domain-like	8091836	3000134	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SH3-domain	8091841	3000153	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ubiquitin-like	8091834	3000157	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FERM central domain-like	8091835	3001227	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e3pvlA1	A: HTH	X: SH3	H: SH3	T: FERM_M	F:	ECOD (20:10:01)
A		e3pvlA4	A: HTH	X: SH3	H: SH3	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.530	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	MyTH4 domain	CATH (4.3.0)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
A	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21989	RA like domain (RA_2)	RA like domain		Domain
A	PF00784	MyTH4 domain (MyTH4)	MyTH4 domain	-	Family
A	PF21998	Myosin-X FERM PH domain-like (FERM_C1_MyoVII)	Myosin-X FERM PH domain-like	This is the C-terminal PH domain of myosin-X FERM domain [1]. FERM domain has a stable arrangement of 3 domains: N-terminal domains - ubiquitin-like, Middle domain - Acyl-CoA binding protein-like and C-terminal domain - PH domain-like.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Usher syndrome type-1G protein	cytoskeletal protein binding spectrin binding protein-containing complex binding protein binding binding identical protein binding	developmental process ear morphogenesis embryonic organ morphogenesis multicellular organismal process ear development sensory organ development animal organ development embryonic morphogenesis embryo development multicellular organism development anatomical structure morphogenesis sensory organ morphogenesis inner ear development inner ear morphogenesis anatomical structure development developmental process ear morphogenesis embryonic organ morphogenesis multicellular organismal process ear development sensory organ development animal organ development embryonic morphogenesis embryo development multicellular organism development anatomical structure morphogenesis sensory organ morphogenesis inner ear development inner ear morphogenesis anatomical structure development animal organ morphogenesis embryonic organ development sensory perception of light stimulus system process sensory perception nervous system process import into cell regulation of localization regulation of biological process regulation of cellular process regulation of cellular component organization transport regulation of transport regulation of receptor-mediated endocytosis biological regulation regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport cellular component organization localization clathrin-dependent endocytosis cellular process cellular component organization or biogenesis receptor-mediated endocytosis endocytosis regulation of clathrin-dependent endocytosis regulation of endocytosis multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis retina homeostasis photoreceptor cell maintenance neuromuscular process equilibrioception neuromuscular process controlling balance inner ear receptor cell development cellular developmental process cell projection organization cell development neuron projection development neurogenesis neuron differentiation cell differentiation system development mechanoreceptor differentiation plasma membrane bounded cell projection organization nervous system development inner ear receptor cell differentiation generation of neurons neuron development inner ear receptor cell stereocilium organization sensory perception of sound sensory perception of mechanical stimulus	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen photoreceptor inner segment non-motile cilium cell projection photoreceptor cell cilium 9+0 non-motile cilium cilium neuron projection plasma membrane bounded cell projection ciliary transition zone photoreceptor connecting cilium cytoskeleton actin cytoskeleton centrosome microtubule organizing center microtubule cytoskeleton cytoplasm cytosol cell periphery plasma membrane membrane Cajal body ciliary base ciliary basal body
A	Myosin VIIa isoform 1	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cytoskeletal motor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cytoskeletal motor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding calmodulin binding identical protein binding spectrin binding protein domain specific binding polypeptide conformation or assembly isomerase activity isomerase activity microfilament motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity	developmental process ear development sensory organ development inner ear development cochlea development animal organ development anatomical structure development multicellular organismal process inner ear receptor cell development cell projection organization epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation developmental process ear development sensory organ development inner ear development cochlea development animal organ development anatomical structure development multicellular organismal process inner ear receptor cell development cell projection organization epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation animal organ morphogenesis system development embryonic organ morphogenesis mechanoreceptor differentiation epithelium development epidermal cell differentiation embryonic morphogenesis nervous system development tissue development inner ear receptor cell differentiation generation of neurons auditory receptor cell development cellular developmental process cell development embryo development cell morphogenesis cellular component organization neurogenesis cellular component organization or biogenesis auditory receptor cell morphogenesis embryonic organ development ear morphogenesis plasma membrane bounded cell projection organization inner ear auditory receptor cell differentiation cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis sensory organ morphogenesis neuron development inner ear morphogenesis cellular process inner ear receptor cell stereocilium organization localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport vacuole organization organelle assembly lytic vacuole organization phagosome maturation cellular component biogenesis vesicle organization lysosome organization organelle organization cellular component assembly phagolysosome assembly system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus vesicle localization establishment of organelle localization cellular localization establishment of vesicle localization cellular pigmentation pigment granule transport establishment of pigment granule localization pigmentation pigment granule localization organelle localization establishment of localization in cell actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization actin filament-based movement sensory perception of light stimulus establishment of protein localization intracellular transport protein transport macromolecule localization intracellular protein localization intracellular protein transport neuromuscular process equilibrioception neuromuscular process controlling balance visual perception	cellular anatomical structure membrane photoreceptor inner segment membrane-bounded organelle ciliary transition zone non-motile cilium 9+0 non-motile cilium cilium neuron projection plasma membrane bounded cell projection cell projection photoreceptor cell cilium organelle photoreceptor connecting cilium cellular anatomical structure membrane photoreceptor inner segment membrane-bounded organelle ciliary transition zone non-motile cilium 9+0 non-motile cilium cilium neuron projection plasma membrane bounded cell projection cell projection photoreceptor cell cilium organelle photoreceptor connecting cilium stereocilium base stereocilium actin-based cell projection stereocilium bundle cluster of actin-based cell projections intracellular organelle intracellular anatomical structure cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol protein-containing complex myosin complex upper tip-link density stereocilia tip link stereocilia tip-link density stereocilia coupling link photoreceptor outer segment myosin VII complex unconventional myosin complex vacuolar membrane lytic vacuole vacuole intracellular membrane-bounded organelle lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane lysosome microvillus pigment granule intracellular vesicle melanosome cytoplasmic vesicle vesicle cell periphery cell cortex apical part of cell plasma membrane plasma membrane region apical plasma membrane synapse cell junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
B	IPR002110	Ankyrin repeat	Repeat
B	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
B	IPR001660	Sterile alpha motif domain	Domain
B	IPR037602	USH1G, SAM domain	Domain
A	IPR041794	Myosin VII, FERM domain C-lobe, repeat 2	Domain
A	IPR000299	FERM domain	Domain
A	IPR019748	FERM central domain	Domain
A	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A	IPR000048	IQ motif, EF-hand binding site	Binding Site
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A	IPR000857	MyTH4 domain	Domain
A	IPR001452	SH3 domain	Domain
A	IPR036106	Class VII myosin, motor domain	Domain
A	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A	IPR001609	Myosin head, motor domain-like	Domain
A	IPR002404	IRS-type PTB domain	Domain
A	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A	IPR051567	Unconventional Myosin ATPase	Family
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR038185	MyTH4 domain superfamily	Homologous Superfamily
A	IPR057130	Myosin VII, N-terminal domain	Domain
A	IPR019749	Band 4.1 domain	Domain
A	IPR041793	Myosin VII, FERM domain C-lobe, repeat 1	Domain
A	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q495M9	Usher syndrome type 1G Usher syndrome retinitis pigmentosa cone-rod dystrophy osteosarcoma Usher Syndrome, Type I hearing loss disorder retinal degeneration Usher syndrome type 1B large cell medulloblastoma