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Dfer_2879 protein of unknown function from Dyadobacter fermentans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 291 0.2 M sodium acetate, 0.2 M ammonium acetate, 30% PEG-4000, 1/70 chymotrypsin, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.88 34.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.779 α = 90 b = 83.65 β = 90 c = 93.773 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 35.3 99.9 0.092 9 14 36244 36244 46.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.07 98.9 0.846 2.67 11.7 1770
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.02 35.3 36178 36178 1802 99.22 0.19 0.19 0.188 0.1852 0.227 0.2286 RANDOM 24.985
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -2.11 2.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.538 r_dihedral_angle_4_deg 22.478 r_dihedral_angle_3_deg 18.314 r_dihedral_angle_1_deg 5.701 r_scangle_it 3.727 r_scbond_it 2.411 r_mcangle_it 1.483 r_angle_refined_deg 1.462 r_angle_other_deg 0.927 r_mcbond_it 0.838
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.538 r_dihedral_angle_4_deg 22.478 r_dihedral_angle_3_deg 18.314 r_dihedral_angle_1_deg 5.701 r_scangle_it 3.727 r_scbond_it 2.411 r_mcangle_it 1.483 r_angle_refined_deg 1.462 r_angle_other_deg 0.927 r_mcbond_it 0.838 r_mcbond_other 0.241 r_chiral_restr 0.092 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4009 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing