3MFN

Dfer_2879 protein of unknown function from Dyadobacter fermentans


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

X-ray crystal structure of Dfer_2879 protein of unknown function from Dyadobacter fermentans.

Osipiuk, J.Xu, X.Cui, H.Chin, S.Eisen, J.Wu, D.Kerfeld, C.Savchenko, A.Edwards, A.M.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized protein
A, B, C, D
157Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)Mutation(s): 0 
Find proteins for C6W4J3 (Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114))
Go to UniProtKB:  C6W4J3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.188 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 69.779α = 90.00
b = 83.650β = 90.00
c = 93.773γ = 90.00
Software Package:
Software NamePurpose
HKL-3000phasing
REFMACrefinement
SOLVEphasing
SBC-Collectdata collection
HKL-3000data scaling
HKL-3000data reduction
SCALEPACKdata scaling
DMphasing
DENZOdata reduction
RESOLVEphasing
PDB_EXTRACTdata extraction
SHELXDphasing
MLPHAREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-04-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description