3LSM

Pyranose 2-oxidase H167A mutant with flavin N(5) sulfite adduct


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.22980.1M MES, 50mM MgCl2, 10% (w/v) monomethylether PEG 2000, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3246.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 101.568α = 90
b = 101.568β = 90
c = 249.577γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mmMIRRORS2009-06-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I911-2MAX III911-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.729.299.50.10614.78.6143007
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.899.10.8912.68.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.729.2140136287199.50.160.160.195RANDOM11.57
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.5-0.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.23
r_dihedral_angle_4_deg15.344
r_dihedral_angle_3_deg13.427
r_dihedral_angle_1_deg6.803
r_scangle_it4.838
r_angle_other_deg3.162
r_scbond_it3.117
r_angle_refined_deg2.066
r_mcangle_it2.056
r_mcbond_it1.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.23
r_dihedral_angle_4_deg15.344
r_dihedral_angle_3_deg13.427
r_dihedral_angle_1_deg6.803
r_scangle_it4.838
r_angle_other_deg3.162
r_scbond_it3.117
r_angle_refined_deg2.066
r_mcangle_it2.056
r_mcbond_it1.27
r_mcbond_other0.462
r_chiral_restr0.241
r_bond_refined_d0.025
r_gen_planes_refined0.012
r_bond_other_d0.002
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9058
Nucleic Acid Atoms
Solvent Atoms1169
Heterogen Atoms168

Software

Software
Software NamePurpose
MAR345data collection
FFTmodel building
CCP4model building
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
FFTphasing
CCP4phasing