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Pyranose 2-oxidase H167A mutant with flavin N(5) sulfite adduct
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.2 298 0.1M MES, 50mM MgCl2, 10% (w/v) monomethylether PEG
2000, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.32 46.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.568 α = 90 b = 101.568 β = 90 c = 249.577 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm MIRRORS 2009-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.2 99.5 0.106 14.7 8.6 143007
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.8 99.1 0.891 2.6 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.7 29.2 140136 2871 99.5 0.16 0.16 0.1741 0.195 0.2063 RANDOM 11.57
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -0.5 1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.23 r_dihedral_angle_4_deg 15.344 r_dihedral_angle_3_deg 13.427 r_dihedral_angle_1_deg 6.803 r_scangle_it 4.838 r_angle_other_deg 3.162 r_scbond_it 3.117 r_angle_refined_deg 2.066 r_mcangle_it 2.056 r_mcbond_it 1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.23 r_dihedral_angle_4_deg 15.344 r_dihedral_angle_3_deg 13.427 r_dihedral_angle_1_deg 6.803 r_scangle_it 4.838 r_angle_other_deg 3.162 r_scbond_it 3.117 r_angle_refined_deg 2.066 r_mcangle_it 2.056 r_mcbond_it 1.27 r_mcbond_other 0.462 r_chiral_restr 0.241 r_bond_refined_d 0.025 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9058 Nucleic Acid Atoms Solvent Atoms 1169 Heterogen Atoms 168
Software Software Software Name Purpose MAR345 data collection FFT model building CCP4 model building REFMAC refinement XDS data reduction XSCALE data scaling FFT phasing CCP4 phasing