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Crystal Structure of FAB F22-4 in complex with a Carbohydrate-mimetic peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C5S PDB ENTRY 3C5S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 290 20% PEG 6000, 50mM IMIDAZOLE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.57 52.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.88 α = 90 b = 69.53 β = 97.71 c = 110.19 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 MIRROR 2006-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.939 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 47.97 97.8 0.071 0.071 13.4 3.8 107480 107480 -3 21.24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 96.8 0.724 0.724 1.9 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3C5S 1.7 47.97 105405 105405 2146 97.6 0.198 0.198 0.197 0.2019 0.245 0.2478 RANDOM 22.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 -0.13 0.94 -1.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.423 r_dihedral_angle_1_deg 17.751 r_dihedral_angle_3_deg 13.604 r_dihedral_angle_4_deg 12.915 r_scangle_it 2.841 r_scbond_it 2.323 r_mcangle_it 2.013 r_mcbond_it 1.829 r_angle_refined_deg 1.59 r_angle_other_deg 0.824
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.423 r_dihedral_angle_1_deg 17.751 r_dihedral_angle_3_deg 13.604 r_dihedral_angle_4_deg 12.915 r_scangle_it 2.841 r_scbond_it 2.323 r_mcangle_it 2.013 r_mcbond_it 1.829 r_angle_refined_deg 1.59 r_angle_other_deg 0.824 r_mcbond_other 0.326 r_symmetry_vdw_other 0.287 r_symmetry_hbond_refined 0.242 r_nbd_refined 0.217 r_nbd_other 0.204 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.093 r_nbtor_other 0.087 r_symmetry_vdw_refined 0.084 r_bond_refined_d 0.014 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6795 Nucleic Acid Atoms Solvent Atoms 789 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling