3E4G

Crystal structure of bovine coupling Factor B, G28E mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.427750% PPG 400, 100 mM Tris-HCl pH 7.4, VAPOR DIFFUSION, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.2846.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 107.476α = 90
b = 50.01β = 109.37
c = 36.886γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210KOHZU2007-05-12SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.0332ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.95550.799.990.07815.74.2959439254729.763
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
0.9550.9851000.3321.61198

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3DZE0.963091066482399.990.1440.1430.164RANDOM14.542
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.110.050.14-0.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.704
r_dihedral_angle_4_deg24.639
r_sphericity_free14.16
r_dihedral_angle_3_deg11.265
r_scangle_it6.545
r_sphericity_bonded6.354
r_dihedral_angle_1_deg6.238
r_scbond_it4.699
r_mcangle_it3.274
r_rigid_bond_restr2.268
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.704
r_dihedral_angle_4_deg24.639
r_sphericity_free14.16
r_dihedral_angle_3_deg11.265
r_scangle_it6.545
r_sphericity_bonded6.354
r_dihedral_angle_1_deg6.238
r_scbond_it4.699
r_mcangle_it3.274
r_rigid_bond_restr2.268
r_mcbond_it2.217
r_angle_other_deg2.144
r_angle_refined_deg2.12
r_mcbond_other1.107
r_chiral_restr0.15
r_bond_refined_d0.027
r_gen_planes_refined0.014
r_bond_other_d0.004
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1508
Nucleic Acid Atoms
Solvent Atoms265
Heterogen Atoms9

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection