3CU1

Crystal Structure of 2:2:2 FGFR2D2:FGF1:SOS complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729812% PEG3350, 4% Tacsimate, pH 7.0, vapor diffusion, hanging drop, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
3.362.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.929α = 90
b = 110.375β = 90
c = 74.699γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray77CCD2007-07-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9793APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.610093.30.06920.53.921046
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.62.6967.90.2812.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.642.9519219104489.990.185220.180340.2768RANDOM16.979
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.42-1.491.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.133
r_dihedral_angle_3_deg16.752
r_dihedral_angle_4_deg15.92
r_dihedral_angle_1_deg3.368
r_angle_refined_deg3.136
r_scangle_it1.981
r_mcangle_it1.534
r_scbond_it1.158
r_mcbond_it0.977
r_nbd_refined0.362
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.133
r_dihedral_angle_3_deg16.752
r_dihedral_angle_4_deg15.92
r_dihedral_angle_1_deg3.368
r_angle_refined_deg3.136
r_scangle_it1.981
r_mcangle_it1.534
r_scbond_it1.158
r_mcbond_it0.977
r_nbd_refined0.362
r_nbtor_refined0.357
r_symmetry_vdw_refined0.319
r_xyhbond_nbd_refined0.303
r_chiral_restr0.281
r_symmetry_hbond_refined0.25
r_bond_refined_d0.053
r_gen_planes_refined0.013
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3730
Nucleic Acid Atoms
Solvent Atoms343
Heterogen Atoms110

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data collection
HKL-3000data reduction
HKL-3000data scaling