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Structure of Bambl lectine in complex with lewix x antigen
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZW0 PDB ENTRY 3ZW0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 28 % PEG 6000, 100MM SODIUM ACETATE PH 5.0, 200MM TRISODIUM CITRATE. 10% ETHYLENE GLYCOL WAD ADDED AS CRYOPROTECTANT PRIOR TO FREEZING
Crystal Properties Matthews coefficient Solvent content 2.3 46.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.44 α = 90 b = 81.44 β = 90 c = 81.44 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40.72 96.2 0.04 26.6 6.2 23162 2 17.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 82.4 0.1 7.9 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ZW0 1.6 40.72 21930 1180 96.23 0.1551 0.15331 0.1608 0.18904 0.1946 RANDOM 12.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.426 r_dihedral_angle_3_deg 10.62 r_dihedral_angle_1_deg 6.892 r_dihedral_angle_4_deg 6.653 r_scangle_it 3.371 r_scbond_it 2.305 r_mcangle_it 1.882 r_angle_refined_deg 1.709 r_mcbond_it 1.081 r_angle_other_deg 0.894
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.426 r_dihedral_angle_3_deg 10.62 r_dihedral_angle_1_deg 6.892 r_dihedral_angle_4_deg 6.653 r_scangle_it 3.371 r_scbond_it 2.305 r_mcangle_it 1.882 r_angle_refined_deg 1.709 r_mcbond_it 1.081 r_angle_other_deg 0.894 r_mcbond_other 0.289 r_nbd_refined 0.241 r_nbd_other 0.198 r_nbtor_refined 0.183 r_symmetry_vdw_other 0.177 r_symmetry_hbond_refined 0.145 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.104 r_nbtor_other 0.088 r_symmetry_vdw_refined 0.028 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1323 Nucleic Acid Atoms Solvent Atoms 237 Heterogen Atoms 156
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing