☰ Navigation Tabs
Crystal structure of Schistosoma mansoni Peroxiredoxin I C48S mutant with one decamer in the ASU
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZTL PDB ENTRY 3ZTL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 200MM NA2SO4, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.36 47.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.44 α = 90 b = 94.985 β = 108.51 c = 114.417 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2012-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 108.5 99.3 0.13 10.91 3.8 81267 3 32.38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.63 96.7 0.52 2.65 3.7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3ZTL 2.493 29.434 1.35 80696 4060 99.38 0.19 0.1879 0.2025 0.1785 27.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.0929 1.7332 10.3055 -7.3889
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.17 f_angle_d 0.984 f_chiral_restr 0.079 f_plane_restr 0.005 f_bond_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13041 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 88
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling COMO phasing