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Open-form NavMS Sodium Channel Pore (with C-terminal Domain)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4F4L PDB ENTRY 4F4L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.1 M NA3CITRATE, 0.1 M TRIS, PH 8.0, 34% PEG400
Crystal Properties Matthews coefficient Solvent content 7.6 84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.15 α = 90 b = 334.38 β = 90 c = 80.21 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2012-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.92 50 99.7 0.2 11.9 13.4 23873 54.83
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.92 3.1 98.6 0.68 4.1 13.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4F4L 2.92 45.77 23860 1238 99.47 0.2588 0.2572 0.2548 0.2871 0.2849 RANDOM 52.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.3775 -19.4132 12.0357
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.76 t_omega_torsion 2.42 t_angle_deg 1.1 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.76 t_omega_torsion 2.42 t_angle_deg 1.1 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2875 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms 157
Software Software Software Name Purpose BUSTER refinement XDS data reduction Aimless data scaling PHASER phasing