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Eg5 - New allosteric binding site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WOG PDB ENTRY 2WOG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.9 20% PEG3350, 2MM MAGNESIUM CHLORIDE, 100MM HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.76 55.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.94 α = 90 b = 62.89 β = 117.46 c = 75.05 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 36.96 99.2 0.08 9.3 3.9 49475 2 21.73
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.78 99.2 0.66 2 3.9
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2WOG 1.691 28.468 1.34 49418 2504 99.03 0.196 0.1941 0.1905 0.2328 0.2259 29.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.5704 -3.116 -0.0374 2.6078
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.965 f_angle_d 1.414 f_chiral_restr 0.092 f_bond_d 0.011 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2496 Nucleic Acid Atoms Solvent Atoms 450 Heterogen Atoms 113
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling MOLREP phasing