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Crystal structure of Pyrococcus furiosus PbaA, an archaeal homolog of proteasome-assembly chaperone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.4 M sodium citrate tribasic, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.373 α = 90 b = 155.187 β = 90 c = 172.004 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2014-06-14 M SINGLE WAVELENGTH 2 2 x-ray 95 CCD ADSC QUANTUM 315 2014-08-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.9792 Photon Factory AR-NW12A 2 SYNCHROTRON NSRRC BEAMLINE BL13B1 1.0721, 1.0539 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 99.9 0.084 40.1 7.4 71119 71040 27.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.29 100 0.421 6.7 7.4 3514
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.25 40 67188 67188 3521 99.87 0.198 0.196 0.22 0.2183 RANDOM 40.995
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.22 -1.62 0.4
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 7.991 r_long_range_B_refined 7.98 r_scangle_other 7.069 r_scbond_it 4.302 r_scbond_other 4.302 r_mcangle_it 4.301 r_mcangle_other 4.301 r_mcbond_other 2.86 r_mcbond_it 2.859 r_angle_refined_deg 1.517
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 7.991 r_long_range_B_refined 7.98 r_scangle_other 7.069 r_scbond_it 4.302 r_scbond_other 4.302 r_mcangle_it 4.301 r_mcangle_other 4.301 r_mcbond_other 2.86 r_mcbond_it 2.859 r_angle_refined_deg 1.517 r_angle_other_deg 1.49 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8770 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection CRANK phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling