☰ Navigation Tabs
Crystal Structure of a T3SS complex from Aeromonas hydrophila
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 297 1.1M Sodium Malonate, 0.1M HEPES, 0.5% Jeffamine, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 3.03 59.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.662 α = 90 b = 151.942 β = 104.95 c = 106.253 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4r Mirrors 2013-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 0.9798 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 96.5 0.026 12.9 1.5 48982 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 15 49886 46394 2484 93.18 0.21493 0.21293 0.2178 0.25222 0.2538 RANDOM 68.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.63 -1.19 -4.25 4.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.054 r_dihedral_angle_4_deg 19.292 r_dihedral_angle_3_deg 18.337 r_long_range_B_other 12.764 r_long_range_B_refined 12.763 r_scangle_other 9.624 r_mcangle_it 9.26 r_mcangle_other 9.151 r_scbond_it 6.707 r_scbond_other 6.509
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.054 r_dihedral_angle_4_deg 19.292 r_dihedral_angle_3_deg 18.337 r_long_range_B_other 12.764 r_long_range_B_refined 12.763 r_scangle_other 9.624 r_mcangle_it 9.26 r_mcangle_other 9.151 r_scbond_it 6.707 r_scbond_other 6.509 r_dihedral_angle_1_deg 6.423 r_mcbond_it 6.073 r_mcbond_other 6.073 r_angle_refined_deg 1.649 r_angle_other_deg 1.249 r_chiral_restr 0.085 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9660 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 1
Software Software Software Name Purpose ADSC data collection Auto-Rickshaw phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling