Experiment: 3UU2

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	Microbatch under oil	8.5	298.15	0.01M Nickel(II) chloride hexahydrate, 0.1M Tris, 20% PEG MME 2000, pH 8.5, Microbatch under oil, temperature 298.15K

Crystal Properties
Matthews coefficient	Solvent content
4.22	70.83

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 182.201	α = 90
b = 108.568	β = 117.83
c = 113.391	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	77.03	CCD	MARMOSAIC 225 mm CCD		2010-05-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE BM14	1.0048	ESRF	BM14

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.33	100.27	95.7	0.11	23	12.1	28544	27261			97.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.59	3.67	93.2		0.526	2.95	9.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	3UPG	3.59	50	21573	1170	98.83	0.3049	0.30196	0.35808	RANDOM	225.198

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
4.96		-1.66	7.52		-14.02

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	42.137
r_dihedral_angle_3_deg	23.251
r_dihedral_angle_4_deg	16.805
r_dihedral_angle_1_deg	7.421
r_scangle_it	1.997
r_angle_refined_deg	1.471
r_scbond_it	1.15
r_mcangle_it	1.104
r_mcbond_it	0.571
r_chiral_restr	0.105

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	42.137
r_dihedral_angle_3_deg	23.251
r_dihedral_angle_4_deg	16.805
r_dihedral_angle_1_deg	7.421
r_scangle_it	1.997
r_angle_refined_deg	1.471
r_scbond_it	1.15
r_mcangle_it	1.104
r_mcbond_it	0.571
r_chiral_restr	0.105
r_bond_refined_d	0.013
r_gen_planes_refined	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6988
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software Name	Purpose
MAR345dtb	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.