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Rhesus macaque MHC class I molecule Mamu-B*17-MW9
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BVO
Crystallization Crystal Properties Matthews coefficient Solvent content 2.66 53.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.018 α = 90 b = 44.419 β = 96.33 c = 79.517 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS IV++ 2009-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 50 27152
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BVO 2.1 50 25779 1370 96.5 0.19274 0.19037 0.1998 0.23668 0.243 RANDOM 28.876
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.15 -0.8 -0.07 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.224 r_dihedral_angle_4_deg 18.145 r_dihedral_angle_3_deg 15.482 r_dihedral_angle_1_deg 6.604 r_scangle_it 3.202 r_scbond_it 1.91 r_angle_refined_deg 1.295 r_mcangle_it 1.227 r_mcbond_it 0.629 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.224 r_dihedral_angle_4_deg 18.145 r_dihedral_angle_3_deg 15.482 r_dihedral_angle_1_deg 6.604 r_scangle_it 3.202 r_scbond_it 1.91 r_angle_refined_deg 1.295 r_mcangle_it 1.227 r_mcbond_it 0.629 r_nbtor_refined 0.299 r_symmetry_vdw_refined 0.238 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.156 r_metal_ion_refined 0.109 r_chiral_restr 0.09 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3167 Nucleic Acid Atoms Solvent Atoms 373 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement