☰ Navigation Tabs
The crystal structure of agmatine ureohydrolase of Thermoplasma volcanium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 291 0.1 M BICINE pH 9.0, 2% v/v 1,4-Dioxane, 10% w/v PEG 20,000, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.44 49.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.139 α = 90 b = 95.139 β = 90 c = 198.375 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2010-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.9792 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 83.4 93.94 0.124 15.7 20.6 26146 64.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.85 100 0.68 4.4 21.3 4199
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 82.39 26146 1398 93.94 0.22208 0.21954 0.2097 0.27105 0.2659 RANDOM 59.624
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.48 1.24 2.48 -3.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.183 r_dihedral_angle_4_deg 18.9 r_dihedral_angle_3_deg 16.728 r_dihedral_angle_1_deg 6.444 r_scangle_it 3.869 r_scbond_it 2.538 r_mcangle_it 1.522 r_angle_refined_deg 1.373 r_mcbond_it 0.972 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.183 r_dihedral_angle_4_deg 18.9 r_dihedral_angle_3_deg 16.728 r_dihedral_angle_1_deg 6.444 r_scangle_it 3.869 r_scbond_it 2.538 r_mcangle_it 1.522 r_angle_refined_deg 1.373 r_mcbond_it 0.972 r_chiral_restr 0.092 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6840 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 6
Software Software Software Name Purpose CBASS data collection SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling