Annotations: 3PZL

The crystal structure of agmatine ureohydrolase of Thermoplasma volcanium

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d3pzlc_	Alpha and beta proteins (a/b)	Arginase/deacetylase	Arginase/deacetylase	automated matches	automated matches	(Thermoplasma volcanium GSS1 ) [TaxId: 273116 ],	SCOPe (2.08)
B	d3pzlb_	Alpha and beta proteins (a/b)	Arginase/deacetylase	Arginase/deacetylase	automated matches	automated matches	(Thermoplasma volcanium GSS1 ) [TaxId: 273116 ],	SCOPe (2.08)
A	d3pzla_	Alpha and beta proteins (a/b)	Arginase/deacetylase	Arginase/deacetylase	automated matches	automated matches	(Thermoplasma volcanium GSS1 ) [TaxId: 273116 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Arginase/deacetylase-like	8073473	3000260	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Arginase/deacetylase-like	8073473	3000260	SCOP2B (2022-06-29)
A	SCOP2 Family	Arginase-like amidino hydrolases	8073472	4000424	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Arginase/deacetylase-like	8073473	3000260	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Gal-bind_lectin	e3pzlC1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Gal-bind_lectin	ECOD (v294.1)
B	Gal-bind_lectin	e3pzlB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Gal-bind_lectin	ECOD (v294.1)
A	Ribosomal_L34	e3pzlA1	A: a/b three-layered sandwiches	X: Globin-like	H: Globin-like	T: Globin-like	F: Ribosomal_L34	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.40.800.10	Alpha Beta	3-Layer(aba) Sandwich	Arginase	Chain A	CATH (4.3.0)
B	3.40.800.10	Alpha Beta	3-Layer(aba) Sandwich	Arginase	Chain A	CATH (4.3.0)
A	3.40.800.10	Alpha Beta	3-Layer(aba) Sandwich	Arginase	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Agmatine ureohydrolase	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines hydrolase activity agmatinase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding ion binding binding metal ion binding small molecule binding	oxoacid metabolic process amino acid metabolic process organic acid metabolic process alpha-amino acid metabolic process arginine metabolic process biogenic amine biosynthetic process putrescine metabolic process small molecule metabolic process carboxylic acid metabolic process primary metabolic process polyamine metabolic process putrescine biosynthetic process from arginine, via agmatine L-amino acid metabolic process putrescine biosynthetic process oxoacid metabolic process amino acid metabolic process organic acid metabolic process alpha-amino acid metabolic process arginine metabolic process biogenic amine biosynthetic process putrescine metabolic process small molecule metabolic process carboxylic acid metabolic process primary metabolic process polyamine metabolic process putrescine biosynthetic process from arginine, via agmatine L-amino acid metabolic process putrescine biosynthetic process amine metabolic process proteinogenic amino acid metabolic process biosynthetic process amine biosynthetic process polyamine biosynthetic process putrescine biosynthetic process from arginine metabolic process cellular process biogenic amine metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR005925	Agmatinase-related	Family
A, B, C	IPR020855	Ureohydrolase, manganese-binding site	Binding Site
A, B, C	IPR023696	Ureohydrolase domain superfamily	Homologous Superfamily
A, B, C	IPR006035	Ureohydrolase	Family

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