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RON in complex with ligand AMP-PNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 20% PEG2K and 2mM MgCl2, pH 7.5, VAPOR DIFFUSION
Crystal Properties Matthews coefficient Solvent content 3.29 62.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.631 α = 90 b = 98.631 β = 90 c = 45.297 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.24 98.53 89 0.052 4.6 21232
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.24 2.3 54.6 0.509 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.24 49.32 20008 1360 94.26 0.2352 0.2313 0.2361 0.2897 0.2879 RANDOM 52.9698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.86 -3.86 7.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.284 r_dihedral_angle_3_deg 17.251 r_dihedral_angle_4_deg 15.285 r_dihedral_angle_1_deg 6.214 r_scangle_it 5.582 r_scbond_it 4.185 r_mcangle_it 2.937 r_mcbond_it 2.431 r_angle_refined_deg 1.278 r_angle_other_deg 0.776
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.284 r_dihedral_angle_3_deg 17.251 r_dihedral_angle_4_deg 15.285 r_dihedral_angle_1_deg 6.214 r_scangle_it 5.582 r_scbond_it 4.185 r_mcangle_it 2.937 r_mcbond_it 2.431 r_angle_refined_deg 1.278 r_angle_other_deg 0.776 r_mcbond_other 0.494 r_symmetry_vdw_other 0.211 r_nbd_refined 0.195 r_nbd_other 0.181 r_nbtor_refined 0.175 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.156 r_symmetry_vdw_refined 0.144 r_nbtor_other 0.085 r_chiral_restr 0.074 r_metal_ion_refined 0.06 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2411 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling