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Crystal structure of Escherichia coli BamB, a lipoprotein component of the beta-barrel assembly machinery complex, native crystals.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 295 0.1M Citric acid, 2M NaCl, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.34 63.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.71 α = 90 b = 101.71 β = 90 c = 108.78 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2010-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9792 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 48 99.1 0.075 17912 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.7 99.7 0.399 6 9.8 2570
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 48 17912 914 99.1 0.1953 0.19711 0.19526 0.1908 0.23303 0.229 RANDOM 49.186
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 0.79 -1.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.097 r_dihedral_angle_4_deg 19.099 r_dihedral_angle_3_deg 19.061 r_dihedral_angle_1_deg 7.582 r_scangle_it 5.34 r_scbond_it 3.199 r_mcangle_it 2.299 r_angle_refined_deg 1.989 r_mcbond_it 1.193 r_chiral_restr 0.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.097 r_dihedral_angle_4_deg 19.099 r_dihedral_angle_3_deg 19.061 r_dihedral_angle_1_deg 7.582 r_scangle_it 5.34 r_scbond_it 3.199 r_mcangle_it 2.299 r_angle_refined_deg 1.989 r_mcbond_it 1.193 r_chiral_restr 0.142 r_bond_refined_d 0.022 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2711 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 1
Software Software Software Name Purpose MxDC data collection PHENIX model building REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing