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anti-EGFR/HER3 Fab DL11 in complex with domain III of EGFR extracellular region
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 286 potassium phosphate/PEG3350/sodium dextran sulfate, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 286K
Crystal Properties Matthews coefficient Solvent content 2.86 56.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.934 α = 90 b = 200.677 β = 90 c = 49.426 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 210r Si 2009-07-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 .9774 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97.9 0.054 20 3.9 74875 74875 -2 23
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 50 74869 73362 1507 97.87 0.183 0.18213 0.18146 0.1818 0.21496 0.2181 RANDOM 24.632
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 -0.76 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.51 r_dihedral_angle_4_deg 17.155 r_dihedral_angle_3_deg 11.926 r_dihedral_angle_1_deg 6.227 r_scangle_it 5.426 r_scbond_it 3.636 r_mcangle_it 3.507 r_mcbond_it 2.4 r_angle_refined_deg 1.24 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.51 r_dihedral_angle_4_deg 17.155 r_dihedral_angle_3_deg 11.926 r_dihedral_angle_1_deg 6.227 r_scangle_it 5.426 r_scbond_it 3.636 r_mcangle_it 3.507 r_mcbond_it 2.4 r_angle_refined_deg 1.24 r_nbtor_refined 0.302 r_nbd_refined 0.191 r_symmetry_vdw_refined 0.157 r_symmetry_hbond_refined 0.152 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4747 Nucleic Acid Atoms Solvent Atoms 650 Heterogen Atoms 100
Software Software Software Name Purpose BOS data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling