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Crystal Structure of Cytochrome P450 CYP101C1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H7R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 289 0.05M Bis-Tris, pH 5.0, 15% w/v polyethylene glycol monomethyl ether 2000, VAPOR DIFFUSION, HANGING DROP, temperature 289.0K
Crystal Properties Matthews coefficient Solvent content 2.24 45.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.986 α = 90 b = 150.148 β = 99.89 c = 68.454 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 Numerical link type Si(111) double crystal monochromatorwith vertical, horizont
al focusing mirrors 2009-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0000 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 75.16 94.6 0.111 0.097 43.5 7.6 89960 85083 1 1 20.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 100 0.46 0.517 9.23 7.5 8937
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2H7R 1.9 50 89577 85083 4494 95 0.17674 0.17387 0.1745 0.23159 0.233 RANDOM 21.268
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.45 -0.58 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.669 r_dihedral_angle_4_deg 18.311 r_dihedral_angle_3_deg 15.959 r_dihedral_angle_1_deg 6.177 r_scangle_it 4.43 r_scbond_it 2.829 r_mcangle_it 1.699 r_angle_refined_deg 1.619 r_mcbond_it 0.932 r_chiral_restr 0.139
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.669 r_dihedral_angle_4_deg 18.311 r_dihedral_angle_3_deg 15.959 r_dihedral_angle_1_deg 6.177 r_scangle_it 4.43 r_scbond_it 2.829 r_mcangle_it 1.699 r_angle_refined_deg 1.619 r_mcbond_it 0.932 r_chiral_restr 0.139 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9142 Nucleic Acid Atoms Solvent Atoms 1175 Heterogen Atoms 153
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling