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2.2 Angstrom Structure of the HP0958 Protein from Helicobacter pylori CCUG 17874
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 18% PEG 3350, 0.1M HEPES pH 7.5, 0.2M magnesium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.4 63.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.72 α = 90 b = 37.951 β = 110.66 c = 66.056 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MARMOSAIC 225 mm CCD Mirrors 2008-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.984 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 91.6 0.056 0.056 33.5 5 20734 19056 1 40
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 65.7 0.22 0.22 3.5 3.4 1327
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 30 18062 981 100 0.25067 0.24844 0.2466 0.29378 0.2933 RANDOM 61.009
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.58 0.77 5.64 -3.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.915 r_dihedral_angle_4_deg 20.678 r_dihedral_angle_3_deg 18.021 r_scangle_it 5.602 r_dihedral_angle_1_deg 5.539 r_scbond_it 3.596 r_mcangle_it 2.45 r_mcbond_it 1.338 r_angle_refined_deg 1.316 r_chiral_restr 0.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.915 r_dihedral_angle_4_deg 20.678 r_dihedral_angle_3_deg 18.021 r_scangle_it 5.602 r_dihedral_angle_1_deg 5.539 r_scbond_it 3.596 r_mcangle_it 2.45 r_mcbond_it 1.338 r_angle_refined_deg 1.316 r_chiral_restr 0.095 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1928 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 17
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling