☰ Navigation Tabs
Crystal structure of the GEF and P4M domain of DrrA/SidM from Legionella pneumophila
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.8 298 20% (w/v) PEG4000, 0.16 M ammonium sulfate, 0.1 M sodium acetate, 20% glycerol, pH 4.8, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.63 53.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.962 α = 90 b = 75.375 β = 90 c = 130.965 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD SI(111) 2009-10-08 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 19.9 100 26358 -3 38.03
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.6 100 0.552 4.2
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION 2.5 19.9 26298 1291 99.8 0.173 0.17 0.1765 0.236 0.2369 45.126
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.76 -0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.408 r_dihedral_angle_3_deg 17.861 r_dihedral_angle_4_deg 17.577 r_dihedral_angle_1_deg 5.999 r_scangle_it 4.751 r_scbond_it 2.772 r_mcangle_it 1.653 r_angle_refined_deg 1.651 r_angle_other_deg 1.233 r_mcbond_it 0.814
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.408 r_dihedral_angle_3_deg 17.861 r_dihedral_angle_4_deg 17.577 r_dihedral_angle_1_deg 5.999 r_scangle_it 4.751 r_scbond_it 2.772 r_mcangle_it 1.653 r_angle_refined_deg 1.651 r_angle_other_deg 1.233 r_mcbond_it 0.814 r_mcbond_other 0.157 r_chiral_restr 0.088 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4747 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 40
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction SHARP phasing