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TM0449 mutant crystal grown by hanging drop method
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NOB PDB ENTRY 3NOB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 295 49% PEG 200, 0.1M HEPES (pH 7.6), VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.15 42.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.549 α = 90 b = 116.718 β = 90 c = 141.202 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.9795 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 99.5 0.089 12.8 4.5 40698 40698
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 99.5 0.52 2.7 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Rigid body refinemet THROUGHOUT PDB ENTRY 3NOB 2.3 30 38582 2037 99.35 0.19585 0.19308 0.24754 0.2405 RANDOM 33.197
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.33 -0.63 -1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.335 r_dihedral_angle_4_deg 18.767 r_dihedral_angle_3_deg 15.903 r_dihedral_angle_1_deg 6.694 r_scangle_it 3.784 r_scbond_it 2.35 r_angle_refined_deg 1.832 r_mcangle_it 1.566 r_angle_other_deg 1.233 r_mcbond_it 0.826
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.335 r_dihedral_angle_4_deg 18.767 r_dihedral_angle_3_deg 15.903 r_dihedral_angle_1_deg 6.694 r_scangle_it 3.784 r_scbond_it 2.35 r_angle_refined_deg 1.832 r_mcangle_it 1.566 r_angle_other_deg 1.233 r_mcbond_it 0.826 r_chiral_restr 0.216 r_mcbond_other 0.192 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7133 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 292
Software Software Software Name Purpose Blu-Ice data collection REFMAC refinement MOSFLM data reduction SCALA data scaling