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Lassa fever virus nucleoprotein complexed with UTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MWP PDB ENTRY 3MWP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 20% PEG3350, 0.2 M Lithium chloride, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.68 54.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 177.11 α = 90 b = 177.11 β = 90 c = 56.72 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2009-01-23 M SINGLE WAVELENGTH 2 1 x-ray 77 CCD ADSC QUANTUM 315 2009-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.978 Diamond I03 2 SYNCHROTRON DIAMOND BEAMLINE I02 0.978 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.903 88.56 99.9 0.075 0.076 12.6 4.5 79046 79030 2 3.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.903 1.96 99.9 0.482 0.49 3.3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3MWP 1.903 76.7 79046 75855 4005 51.14 0.18484 0.18276 0.1822 0.22403 0.2163 RANDOM 53.375
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.74 6.74 -13.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.141 r_dihedral_angle_4_deg 20.165 r_dihedral_angle_3_deg 16.781 r_dihedral_angle_1_deg 6.121 r_scangle_it 4.871 r_scbond_it 3.715 r_mcangle_it 2.12 r_angle_refined_deg 1.493 r_mcbond_it 1.452 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.141 r_dihedral_angle_4_deg 20.165 r_dihedral_angle_3_deg 16.781 r_dihedral_angle_1_deg 6.121 r_scangle_it 4.871 r_scbond_it 3.715 r_mcangle_it 2.12 r_angle_refined_deg 1.493 r_mcbond_it 1.452 r_chiral_restr 0.102 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12071 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 90
Software Software Software Name Purpose DNA data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling