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Crystal structure of Lassa fever virus nucleoprotein in complex with Mn2+
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MWP PDB ENTRY 3MWP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 20% PEG3350, 0.2 M Lithium chloride, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.66 53.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 176.88 α = 90 b = 176.88 β = 90 c = 56.469 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2009-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.978 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 153.18 100 0.069 0.072 2.5 3.7 134699 134699 2 2.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.01 99 0.39 0.39 2.9 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3MWP 1.982 153.18 134882 129740 6835 99.52 0.18306 0.18124 0.2106 0.21754 0.2493 RANDOM 41.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 22.21 22.21 -44.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.678 r_dihedral_angle_4_deg 17.542 r_dihedral_angle_3_deg 16.415 r_dihedral_angle_1_deg 6.1 r_scangle_it 5.551 r_scbond_it 3.883 r_mcangle_it 2.264 r_angle_refined_deg 1.656 r_mcbond_it 1.409 r_chiral_restr 0.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.678 r_dihedral_angle_4_deg 17.542 r_dihedral_angle_3_deg 16.415 r_dihedral_angle_1_deg 6.1 r_scangle_it 5.551 r_scbond_it 3.883 r_mcangle_it 2.264 r_angle_refined_deg 1.656 r_mcbond_it 1.409 r_chiral_restr 0.113 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11931 Nucleic Acid Atoms Solvent Atoms 342 Heterogen Atoms 6
Software Software Software Name Purpose MOSFLM data reduction Moppre model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling Moppre phasing