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The Crystal Structure of FucU from Bifidobacterium longum to 1.65A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 298 25% PEG 3350, 0.1M Hepes pH 7.5, 0.2M Sodium chloride, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.5 50.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.047 α = 90 b = 83.859 β = 95.11 c = 144.813 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-01-01 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99.9 0.085 8 3.3 189426
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.71 100 0.579 3.3 18844
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.65 40.72 189234 9500 99.82 0.183 0.182 0.1814 0.205 0.2046 RANDOM 21.613
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.084 r_dihedral_angle_4_deg 22.628 r_dihedral_angle_3_deg 11.678 r_dihedral_angle_1_deg 5.225 r_scangle_it 3.657 r_scbond_it 2.623 r_mcangle_it 1.398 r_angle_refined_deg 1.338 r_mcbond_it 0.775 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.084 r_dihedral_angle_4_deg 22.628 r_dihedral_angle_3_deg 11.678 r_dihedral_angle_1_deg 5.225 r_scangle_it 3.657 r_scbond_it 2.623 r_mcangle_it 1.398 r_angle_refined_deg 1.338 r_mcbond_it 0.775 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10544 Nucleic Acid Atoms Solvent Atoms 1317 Heterogen Atoms 161
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELX phasing MLPHARE phasing DM phasing ARP/wARP model building Coot model building