3MVK | pdb_00003mvk

The Crystal Structure of FucU from Bifidobacterium longum to 1.65A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d3mvkj_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
I	d3mvki_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
H	d3mvkh_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
G	d3mvkg_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
F	d3mvkf_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
E	d3mvke_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
D	d3mvkd_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
C	d3mvkc_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
B	d3mvkb_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
A	d3mvka_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
G	SCOP2 Family	RbsD-like	8060318	4001142	SCOP2 (2022-06-29)
G	SCOP2 Superfamily	RbsD-like	8060319	3000903	SCOP2 (2022-06-29)
F	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	PBP	e3mvkJ1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v294.1)
I	PBP	e3mvkI1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v294.1)
H	PBP	e3mvkH1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v294.1)
G	PBP	e3mvkG1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v294.1)
F	PBP	e3mvkF1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v294.1)
E	PBP	e3mvkE1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v294.1)
D	PBP	e3mvkD1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v294.1)
C	PBP	e3mvkC1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v294.1)
B	PBP	e3mvkB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v294.1)
A	SH2	e3mvkA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: MAPEG domain-like	T: MAPEG domain-like	F: SH2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
I	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
H	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
G	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
F	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
E	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
D	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
C	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
B	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
A	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	protein FucU	isomerase activity D-ribose pyranase activity catalytic activity intramolecular transferase activity L-fucose mutarotase activity racemase and epimerase activity racemase and epimerase activity, acting on carbohydrates and derivatives binding fucose binding monosaccharide binding carbohydrate binding small molecule binding	monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process small molecule metabolic process metabolic process cellular process primary metabolic process fucose metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR023750	RbsD-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR007721	D-ribose pyranase RbsD/L-fucose mutarotase FucU	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR050443	RbsD/FucU L-fucose mutarotase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.