☰ Navigation Tabs
Crystal structure of rat phosphodiesterase 10A in complex with ligand WEB-3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 PEG, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.33 63.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.149 α = 90 b = 120.149 β = 90 c = 83.119 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD LN2 COOLED FIXED-EXIT 2006-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.947 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 64.96 94.3 0.068 9 3.4 18763 19899
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 71.5 0.523 1.4 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLPREP THROUGHOUT 2.3 64.96 18762 17793 969 94.29 0.1775 0.17851 0.1759 0.22851 0.2336 RANDOM 39.704
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.87 -0.93 -1.87 2.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.042 r_dihedral_angle_4_deg 16.488 r_dihedral_angle_3_deg 15.645 r_scangle_it 5.08 r_dihedral_angle_1_deg 5.017 r_scbond_it 3.605 r_mcangle_it 2.448 r_mcbond_it 1.982 r_angle_refined_deg 1.056 r_angle_other_deg 0.853
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.042 r_dihedral_angle_4_deg 16.488 r_dihedral_angle_3_deg 15.645 r_scangle_it 5.08 r_dihedral_angle_1_deg 5.017 r_scbond_it 3.605 r_mcangle_it 2.448 r_mcbond_it 1.982 r_angle_refined_deg 1.056 r_angle_other_deg 0.853 r_mcbond_other 0.357 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.196 r_symmetry_vdw_other 0.183 r_nbtor_refined 0.179 r_nbd_other 0.174 r_xyhbond_nbd_refined 0.126 r_symmetry_hbond_refined 0.113 r_metal_ion_refined 0.093 r_nbtor_other 0.085 r_chiral_restr 0.057 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2499 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling