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Structure of Tom71 complexed with Hsp70 Ssa1 C terminal tail indicating conformational plasticity
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FP4 PDB entry 3FP4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 20% Ethylene Glycol, 20% PEG 6000, 0.1M Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.63 53.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.148 α = 90 b = 97.971 β = 90 c = 129.102 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARMOSAIC 300 mm CCD 2009-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 50 98.6 0.095 0.095 30.8 5.7 33761 33761 2 2 40
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.19 2.27 89.5 0.43 0.43 2.5 3.1 3011
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3FP4 2.19 8 31246 1652 98.86 0.22942 0.22731 0.2266 0.27112 0.2707 RANDOM 34.915
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.08 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.564 r_dihedral_angle_4_deg 17.9 r_dihedral_angle_3_deg 13.232 r_dihedral_angle_1_deg 4.101 r_scangle_it 1.284 r_angle_refined_deg 0.903 r_scbond_it 0.846 r_mcangle_it 0.617 r_mcbond_it 0.381 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.564 r_dihedral_angle_4_deg 17.9 r_dihedral_angle_3_deg 13.232 r_dihedral_angle_1_deg 4.101 r_scangle_it 1.284 r_angle_refined_deg 0.903 r_scbond_it 0.846 r_mcangle_it 0.617 r_mcbond_it 0.381 r_nbtor_refined 0.292 r_nbd_refined 0.172 r_symmetry_vdw_refined 0.158 r_symmetry_hbond_refined 0.12 r_xyhbond_nbd_refined 0.117 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3893 Nucleic Acid Atoms Solvent Atoms 242 Heterogen Atoms 12
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling