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Crystal structure of human ferritin FTL498InsTC pathogenic mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FFX pdb entry 2FFX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 293 0.25M CADMIUM SULFATE, 0.1M HEPES, 0.96M SODIUM ACETATE, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.39 63.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.355 α = 90 b = 151.355 β = 90 c = 151.355 γ = 90
Symmetry Space Group I 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Silicon toroidal mirror 2007-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9793 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 61.78 98.3 0.075 0.075 5.8 5.1 25503 25503 24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.95 98.3 0.407 0.407 2 5.2 3572
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2FFX 1.85 61.78 23733 23733 1237 97.94 0.18031 0.18031 0.17874 0.1847 0.21078 0.2177 RANDOM 17.969
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.205 r_dihedral_angle_3_deg 12.619 r_dihedral_angle_4_deg 12.352 r_dihedral_angle_1_deg 4.814 r_scangle_it 4.675 r_angle_other_deg 4.153 r_scbond_it 3.378 r_mcangle_it 2.245 r_mcbond_it 1.295 r_angle_refined_deg 1.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.205 r_dihedral_angle_3_deg 12.619 r_dihedral_angle_4_deg 12.352 r_dihedral_angle_1_deg 4.814 r_scangle_it 4.675 r_angle_other_deg 4.153 r_scbond_it 3.378 r_mcangle_it 2.245 r_mcbond_it 1.295 r_angle_refined_deg 1.244 r_chiral_restr 0.087 r_gen_planes_other 0.068 r_gen_planes_refined 0.015 r_bond_refined_d 0.014 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1247 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms 17
Software Software Software Name Purpose DNA data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling