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Ca2+ release from the endoplasmic reticulum of NY-ESO-1 specific T cells is modulated by the affinity of T cell receptor and by the use of the CD8 co-receptor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 294 16% PEG 8K, 20mM MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.63 53.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.853 α = 90 b = 93.754 β = 90.02 c = 79.903 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 30 98.8 0.066 109988 108788 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 0.767 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 29.8 104441 5497 98.86 0.19015 0.18758 0.1861 0.2389 0.2361 RANDOM 37.524
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 0.01 0.38 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.187 r_dihedral_angle_4_deg 17.954 r_dihedral_angle_3_deg 13.571 r_dihedral_angle_1_deg 6.353 r_scangle_it 3.64 r_scbond_it 2.404 r_mcangle_it 1.471 r_angle_refined_deg 1.463 r_mcbond_it 0.981 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.187 r_dihedral_angle_4_deg 17.954 r_dihedral_angle_3_deg 13.571 r_dihedral_angle_1_deg 6.353 r_scangle_it 3.64 r_scbond_it 2.404 r_mcangle_it 1.471 r_angle_refined_deg 1.463 r_mcbond_it 0.981 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.228 r_symmetry_hbond_refined 0.224 r_xyhbond_nbd_refined 0.216 r_chiral_restr 0.101 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6322 Nucleic Acid Atoms Solvent Atoms 1703 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection EPMR phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling