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Crystal structure of ArsD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 25% PEG 6000, 0.1 M calcium acetate, 0.1 M HEPES, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.4 48.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.841 α = 90 b = 73.774 β = 97.3 c = 41.248 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 mirrors 2007-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 32-ID 1.0 APS 32-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 40.9 97.9 0.051 16 4.2 44159 43232 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.52 97.3 0.438 3.1 4.2 6273
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 35.78 41036 2171 97.68 0.19348 0.19212 0.198 0.21912 0.2259 RANDOM 16.299
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 0.18 -0.18 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.808 r_dihedral_angle_4_deg 21.17 r_dihedral_angle_3_deg 12.243 r_dihedral_angle_1_deg 5.099 r_scangle_it 3.181 r_scbond_it 1.909 r_mcangle_it 1.244 r_angle_refined_deg 1.157 r_mcbond_it 0.651 r_chiral_restr 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.808 r_dihedral_angle_4_deg 21.17 r_dihedral_angle_3_deg 12.243 r_dihedral_angle_1_deg 5.099 r_scangle_it 3.181 r_scbond_it 1.909 r_mcangle_it 1.244 r_angle_refined_deg 1.157 r_mcbond_it 0.651 r_chiral_restr 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1492 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling